Package index • pharmhand

All functions

ADaMData(): ADaMData Class
AnalysisMeta(): AnalysisMeta Class
AnalysisResults(): AnalysisResults Class
ClinicalPlot(): ClinicalPlot Class
ClinicalReport(): ClinicalReport Class
ClinicalTable(): ClinicalTable Class
CountLayer(): Count Layer Class
DescriptiveLayer(): Descriptive Layer Class
HTAEndpoint(): HTAEndpoint Class
HTASection(): HTASection Class
LayeredTable(): Layered Table Class
OneArmStudy(): OneArmStudy Class
PerformanceReport(): PerformanceReport Class
PopulationSection(): PopulationSection Class
PrimaryEndpoint(): PrimaryEndpoint Class
ReportSection(): ReportSection Class
S7_classes: S7 Classes for Clinical Study Reports
S7_generics: S7 Generics and Methods for Clinical Reports
S7_registration: S7 Method Registration and Package Initialization
SOCPTSection(): SOCPTSection Class
SafetyEndpoint(): SafetyEndpoint Class
SecondaryEndpoint(): SecondaryEndpoint Class
ShiftLayer(): Shift Layer Class
StudyResult(): StudyResult Class
SubgroupSection(): SubgroupSection Class
TwoArmStudy(): TwoArmStudy Class
adam_core: High-Performance ADaM Analysis Core
add_table() add_plot() add_section() add_content(): Add a table to a StudyResult
add_layer(): Add a layer to a LayeredTable
add_to_docx(): Add content to a Word document
analyze(): Analyze ADaM datasets
analyze_ADaMData(): Analyze ADaMData
analyze_soc_pt(): Analyze Adverse Events by SOC and PT
analyze_study(): Analyze Study (S7 Method)
analyze_study_OneArmStudy(): Analyze OneArmStudy
analyze_study_TwoArmStudy(): Analyze TwoArmStudy
apply_clinical_style(): Apply Clinical Table Styling
apply_composite(): Apply a composite format
apply_format(): Apply a format specification to values
apply_subgroups(): Apply Subgroup Analysis
as_flextable(): Convert analysis results to flextable
as_flextable_AnalysisResults(): Convert AnalysisResults to flextable (S7 Method)
as_gt(): Convert analysis results to gt
as_gt_AnalysisResults(): Convert AnalysisResults to gt (S7 Method)
build_layer(): Build a single layer
build_table(): Build a LayeredTable
calculate_ae_tte_data(): Calculate AE TTE Data for a specific SOC
calculate_baseline(): Calculate Baseline Characteristics
chef_integration: Chef Pipeline Integration
chef_to_analysis_results(): Convert Chef Results to AnalysisResults
composite_format(): Composite Format Specification
create_ae_km_plot_for_soc(): Create AE KM Plot for a specific SOC
create_ae_table(): Create Adverse Event Table
create_analysis_meta(): Create Analysis Metadata
create_cfb_summary_table(): Create Change from Baseline Summary Table
create_chef_endpoint(): Create Chef Endpoint Specification
create_clinical_table(): Helper to create a ClinicalTable from AnalysisResults
create_conmeds_table(): Create Concomitant Medications Table
create_demographics_table(): Create Demographics Table
create_disposition_table(): Create Subject Disposition Table
create_forest_plot(): Create Subgroup Forest Plot
create_hta_table(): Create HTA-Style Table
create_km_plot(): Create Kaplan-Meier Plot
create_lab_shift_table(): Create Laboratory Shift Table
create_lab_summary_table(): Create Laboratory Summary Table
create_medical_history_table(): Create Medical History Table
create_population_summary_table(): Create Analysis Populations Summary Table
create_primary_endpoint_table(): Create Primary Endpoint Summary Table
create_region_table(): Create Enrollment by Region Table
create_responder_table(): Create Responder Summary Table
create_study_report(): Create Report from Study
create_subgroup_analysis_table(): Create Subgroup Analysis Table
create_subgroup_table(): Create Subgroup Analysis Table
create_tte_summary_table(): Create Time-to-Event Summary Table
create_vs_by_visit_table(): Create Vital Signs by Visit Table
format_ci(): Format confidence intervals
format_content(): Format clinical content to different output formats
format_number(): Format numbers with specified decimal places
format_percentage(): Format values as percentages
fmt_n_pct() fmt_mean_sd() fmt_median_range() fmt_ci() fmt_pvalue(): Common Clinical Format Presets
format_pvalue(): Format p-values
format_spec(): Create a Format Specification
formatting: Format String Grammar for Clinical Tables
generate_word(): Generate a Word document from a ClinicalReport
get_chef_stat(): Register Chef Statistical Functions
get_filtered_data(): Get Filtered Data
get_trt_n(): Get Treatment Group Counts
layered_to_flextable(): Convert LayeredTable to flextable
layers: Layer Composition System for Clinical Tables
list_chef_stats(): List Available Chef Statistical Functions
reporting_engine: Optimized Reporting Engine
run_chef_pipeline(): Run Chef Pipeline with pharmhand Integration
study_logic: Consolidated Study Logic
summarize_content(): Generate a summary of clinical content
to_word(): Convert clinical content to Word format
write_docx(): Write clinical content to a Word document
write_docx_ClinicalReport(): Write ClinicalReport to Word (S7 Method)