Generates a league table showing all pairwise treatment comparisons from a network meta-analysis.
Source:R/meta_network.R
create_league_table.RdGenerates a league table showing all pairwise treatment comparisons from a network meta-analysis.
Usage
create_league_table(
nma_result,
digits = 2,
show_ci = TRUE,
highlight_sig = TRUE,
conf_level = NULL,
theme = c("hta", "iqwig", "gba", "clinical")
)Arguments
- nma_result
Result from network_meta()
- digits
Integer. Decimal places for estimates. Default: 2
- show_ci
Logical. Show confidence intervals. Default: TRUE
- highlight_sig
Logical. Highlight significant comparisons. Default: TRUE
- conf_level
Numeric. Confidence level. If NULL (default), uses the level from the NMA result or falls back to 0.95.
- theme
Theme preset: "hta", "iqwig", "gba", or "clinical" (default: "hta")
Value
ClinicalTable with styled league table
Examples
# Create league table for NMA
nma_data <- data.frame(
study = c("S1", "S2", "S3"),
treat1 = c("A", "B", "A"),
treat2 = c("B", "C", "C"),
effect = log(c(0.75, 0.90, 0.80)),
se = c(0.12, 0.15, 0.18)
)
nma_result <- network_meta(nma_data, effect_measure = "hr")
table <- create_league_table(nma_result)
print(table)
#> <pharmhand::ClinicalTable>
#> @ type : chr "league_table"
#> @ title : chr "League Table (HR)"
#> @ metadata :List of 4
#> .. $ theme : chr "hta"
#> .. $ effect_measure: chr "hr"
#> .. $ n_treatments : int 3
#> .. $ reference : chr "A"
#> @ data : tibble [3 × 4] (S3: tbl_df/tbl/data.frame)
#> $ Treatment: chr [1:3] "A" "B" "C"
#> $ A : chr [1:3] "A" "0.75 (0.59, 0.95)*" "0.80 (0.56, 1.14)"
#> $ B : chr [1:3] "1.33 (1.05, 1.69)*" "B" "1.07 (0.70, 1.63)"
#> $ C : chr [1:3] "1.25 (0.88, 1.78)" "0.94 (0.61, 1.43)" "C"
#> @ flextable :List of 7
#> .. $ header :List of 8
#> .. ..$ dataset :'data.frame': 2 obs. of 4 variables:
#> .. .. ..$ Treatment: chr [1:2] "League Table (HR)" "Treatment"
#> .. .. ..$ A : chr [1:2] "League Table (HR)" "A"
#> .. .. ..$ B : chr [1:2] "League Table (HR)" "B"
#> .. .. ..$ C : chr [1:2] "League Table (HR)" "C"
#> .. ..$ content :List of 5
#> .. .. ..$ data :List of 8
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "League Table (HR)"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
#> .. .. .. .. ..$ color : chr NA
#> .. .. .. .. ..$ shading.color : chr NA
#> .. .. .. .. ..$ font.family : chr NA
#> .. .. .. .. ..$ hansi.family : chr NA
#> .. .. .. .. ..$ eastasia.family: chr NA
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#> .. .. .. .. ..$ url : chr NA
#> .. .. .. .. ..$ eq_data : chr NA
#> .. .. .. .. ..$ word_field_data: chr NA
#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "Treatment"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
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#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "League Table (HR)"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
#> .. .. .. .. ..$ color : chr NA
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#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "A"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
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#> .. .. .. .. ..$ eastasia.family: chr NA
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#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "League Table (HR)"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
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#> .. .. .. .. ..$ word_field_data: chr NA
#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "B"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
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#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "League Table (HR)"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
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#> .. .. .. .. ..$ word_field_data: chr NA
#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr "C"
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
#> .. .. .. .. ..$ color : chr NA
#> .. .. .. .. ..$ shading.color : chr NA
#> .. .. .. .. ..$ font.family : chr NA
#> .. .. .. .. ..$ hansi.family : chr NA
#> .. .. .. .. ..$ eastasia.family: chr NA
#> .. .. .. .. ..$ cs.family : chr NA
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#> .. .. .. .. ..$ width : num NA
#> .. .. .. .. ..$ height : num NA
#> .. .. .. .. ..$ url : chr NA
#> .. .. .. .. ..$ eq_data : chr NA
#> .. .. .. .. ..$ word_field_data: chr NA
#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..- attr(*, "dim")= int [1:2] 2 4
#> .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. ..$ nrow : int 2
#> .. .. ..$ ncol : int 4
#> .. .. ..$ default:List of 1
#> .. .. .. ..$ :'data.frame': 1 obs. of 19 variables:
#> .. .. .. .. ..$ txt : chr ""
#> .. .. .. .. ..$ font.size : num NA
#> .. .. .. .. ..$ italic : logi NA
#> .. .. .. .. ..$ bold : logi NA
#> .. .. .. .. ..$ underlined : logi NA
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#> .. .. .. .. ..$ shading.color : chr NA
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#> .. .. .. .. ..$ hansi.family : chr NA
#> .. .. .. .. ..$ eastasia.family: chr NA
#> .. .. .. .. ..$ cs.family : chr NA
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#> .. .. .. .. ..$ width : num NA
#> .. .. .. .. ..$ height : num NA
#> .. .. .. .. ..$ url : chr NA
#> .. .. .. .. ..$ eq_data : chr NA
#> .. .. .. .. ..$ word_field_data: chr NA
#> .. .. .. .. ..$ img_data :List of 1
#> .. .. .. .. .. ..$ : NULL
#> .. .. .. .. ..$ .chunk_index : int 1
#> .. .. .. ..- attr(*, "class")= chr "paragraph"
#> .. .. ..- attr(*, "class")= chr "chunkset_struct"
#> .. ..$ col_keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. ..$ colwidths : Named num [1:4] 0.846 1.14 1.14 1.091
#> .. .. ..- attr(*, "names")= chr [1:4] "Treatment" "A" "B" "C"
#> .. ..$ rowheights: num [1:2] 0.272 0.272
#> .. ..$ hrule : chr [1:2] "auto" "auto"
#> .. ..$ spans :List of 2
#> .. .. ..$ rows : num [1:2, 1:4] 4 1 0 1 0 1 0 1
#> .. .. ..$ columns: num [1:2, 1:4] 1 1 1 1 1 1 1 1
#> .. ..$ styles :List of 3
#> .. .. ..$ cells:List of 22
#> .. .. .. ..$ vertical.align :List of 5
#> .. .. .. .. ..$ data : chr [1:2, 1:4] "center" "center" "center" "center" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: chr "center"
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
#> .. .. .. ..$ width :List of 5
#> .. .. .. .. ..$ data : num [1:2, 1:4] NA NA NA NA NA NA NA NA
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
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#> .. .. .. .. ..$ data : num [1:2, 1:4] NA NA NA NA NA NA NA NA
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: num NA
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#> .. .. .. .. ..$ data : int [1:2, 1:4] 0 0 0 0 0 0 0 0
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: int 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
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#> .. .. .. .. ..$ data : int [1:2, 1:4] 0 0 0 0 0 0 0 0
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: int 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
#> .. .. .. ..$ margin.left :List of 5
#> .. .. .. .. ..$ data : int [1:2, 1:4] 0 0 0 0 0 0 0 0
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: int 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
#> .. .. .. ..$ margin.right :List of 5
#> .. .. .. .. ..$ data : int [1:2, 1:4] 0 0 0 0 0 0 0 0
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
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#> .. .. .. .. ..$ default: int 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
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#> .. .. .. .. ..$ data : num [1:2, 1:4] 1 1 1 1 1 1 1 1
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: num 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
#> .. .. .. ..$ border.width.top :List of 5
#> .. .. .. .. ..$ data : num [1:2, 1:4] 1 1 1 1 1 1 1 1
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: num 0
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
#> .. .. .. ..$ border.color.bottom:List of 5
#> .. .. .. .. ..$ data : chr [1:2, 1:4] "gray70" "gray70" "gray70" "gray70" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: chr "transparent"
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#> .. .. .. ..$ border.color.top :List of 5
#> .. .. .. .. ..$ data : chr [1:2, 1:4] "gray70" "gray70" "gray70" "gray70" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: chr "transparent"
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
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#> .. .. .. .. ..$ data : chr [1:2, 1:4] "black" "black" "black" "black" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: chr "transparent"
#> .. .. .. .. ..- attr(*, "class")= chr "fpstruct"
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#> .. .. .. .. ..$ data : chr [1:2, 1:4] "black" "black" "black" "black" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. ..$ : NULL
#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
#> .. .. .. .. ..$ ncol : int 4
#> .. .. .. .. ..$ default: chr "transparent"
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#> .. .. .. .. ..$ data : chr [1:2, 1:4] "solid" "solid" "solid" "solid" ...
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ nrow : int 2
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#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
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#> .. .. .. .. ..$ data : chr [1:2, 1:4] "solid" "solid" "solid" "solid" ...
#> .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
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#> .. .. .. .. .. .. ..$ : chr [1:4] "Treatment" "A" "B" "C"
#> .. .. .. .. ..$ keys : chr [1:4] "Treatment" "A" "B" "C"
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